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0610 IGCSE Biology/Topic 5 Enzymes/4 interactive simulations/drag to rotate the 3D models

Enzymes, made interactive

Four 3D simulations covering Topic 5: enzymes as catalysts, how the active site works, and the effects of temperature and pH. Explanations of kinetic energy, collisions and the enzyme-substrate complex cover the Supplement too.

1. Enzymes are biological catalysts 3D · 5.1

A catalyst speeds up a chemical reaction and is not changed by it. Hydrogen peroxide breaks down very slowly into water and oxygen. Add a catalyst and the oxygen bubbles make the washing-up liquid foam up the cylinder. Potato cells contain the enzyme catalase.

drag to rotate · wheel to zoom

Add to the hydrogen peroxide

FOAM HEIGHT
0 cm³
CATALYST AFTERWARDS

2. The active site 3D · 5.1

Enzymes are proteins. Each has an active site whose shape is complementary to one substrate. The substrate fits into the active site, the reaction happens and the products leave. The enzyme is unchanged and can be used again and again.

drag to rotate · wheel to zoom

Substrate

STAGE
enzyme free
REACTIONS
0

3. Temperature 3D · 5.1

Investigate amylase digesting starch at different temperatures. Every minute a drop of the mixture goes into iodine on a spotting tile. While starch remains it turns blue-black; when the iodine stays orange-brown, all the starch has gone. Then switch to the molecule view to see why.

drag to rotate · wheel to zoom

View · water bath

temperature / °Ctime / minrate / min⁻¹

4. pH 3D · 5.1

The active site's shape is held by bonds that are sensitive to pH. Away from its optimum pH the shape changes, the substrate no longer fits as well and the rate falls. Far from the optimum the enzyme is denatured. Different enzymes have different optimum pH values.

drag to rotate · wheel to zoom

Enzyme

pH 7
RATE (% OF MAXIMUM)
ACTIVE SITE
Built for Cambridge IGCSE Biology 0610, Topic 5 Enzymes. The enzyme models are schematic: a globular protein with one ring-shaped active site. Times and rates are typical values.

About this lab: Enzymes

Four interactive 3D simulations for Cambridge IGCSE Biology 0610 topic 5 Enzymes: hydrogen peroxide foaming with manganese(IV) oxide, raw and boiled potato to show enzymes as biological catalysts, substrate binding to a complementary active site and the enzyme-substrate complex, the amylase and iodine spotting tile investigation of temperature with a molecule view of collisions and denaturation, and the effect of pH on the active site of pepsin, amylase and trypsin.

Four 3D simulations covering Topic 5: enzymes as catalysts, how the active site works, and the effects of temperature and pH. Explanations of kinetic energy, collisions and the enzyme-substrate complex cover the Supplement too.

Enzymes is a free, browser-based simulation for Cambridge IGCSE Biology 0610 (topic 5 Enzymes). The course is assessed in Paper 1/2 (Multiple choice), Paper 3/4 (Theory), Paper 5 (Practical Test), Paper 6 (Alternative to Practical). Syllabus for examination in 2026-2028. There are 4 tabs, each a self-contained experiment with its own controls and live readings, and nothing to install: it runs on a laptop, tablet or classroom projector.

Syllabus coverage

Full syllabus map: IGCSE Biology 0610 topic 5.

How to use this simulation

  1. 1. Enzymes are biological catalysts. A catalyst speeds up a chemical reaction and is not changed by it.
  2. 2. The active site. Enzymes are proteins.
  3. 3. Temperature. Investigate amylase digesting starch at different temperatures.
  4. 4. pH. The active site's shape is held by bonds that are sensitive to pH.
  5. The buttons at the end of the tab strip give the scene the whole window (Full screen, Hide controls) and, on a dark stage, a projector-friendly palette (Light scene). Many scenes also have drag handles: drag them to change the set-up directly.

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