TheLucidSTEM‹ Biology simulationsBiology · AS Level 9700 · 1 Cell structure
9700 AS Biology/Topic 1 Cell structure/7 interactive simulations/drag to rotate 3D scenes, click an organelle to learn about it

Cell structure, made interactive

Seven simulations covering Topic 1: the microscope and magnification (1.1), the organelles of eukaryotic cells (1.2), and the structure of prokaryotes and viruses (1.3). Rotate the 3D cells with drag, zoom with the wheel or pinch, and click any organelle to see what it does.

1. Animal cell 3D · 1.2

A typical animal cell as seen with an electron microscope, rebuilt in three dimensions. Click an organelle in the scene or pick it from the list. Switch to Test yourself and the sim names a function: click the organelle that does it.

drag to rotate · wheel to zoom · click an organelle

Organelle

2. Plant cell 3D · 1.2

Everything the animal cell has, plus three things it does not: a cellulose cell wall, chloroplasts and a large permanent vacuole. Click a chloroplast to see the grana and stroma inside.

drag to rotate · wheel to zoom · click an organelle

Organelle

3. Bacterial cell: a prokaryote 3D · 1.3

No nucleus, no membrane-bound organelles, and about a tenth of the size of a eukaryotic cell. Click the parts, then compare the two cell types in the table.

drag to rotate · wheel to zoom · click a part

Part

prokaryoteeukaryote
size1 to 5 µm10 to 100 µm
DNAcircular, free in cytoplasm, no histoneslinear, in a nucleus, wound on histones
ribosomes70S (smaller)80S (larger)
membrane-bound organellesnonemany
cell wallpeptidoglycan (murein)cellulose in plants, none in animals

4. Virtual light microscope and eyepiece graticule 2D · 1.1

Choose an objective lens and see the field of view change. Calibrate the eyepiece graticule against the stage micrometer, then click two points on a cell to measure it in graticule divisions and convert to micrometres.

Microscope

TOTAL MAGNIFICATION
FIELD OF VIEW
1 GRATICULE DIVISION
MEASUREMENT
click two points

5. Magnification and scale bars 2D · 1.1

An electron micrograph comes with a scale bar, not a magnification. Measure the scale bar to find the magnification, then measure the cell image to find its actual size. Drag the ruler handles; the working updates as you go.

Practice

SCALE BAR (IMAGE)
SCALE BAR (ACTUAL)
RULER READS
MAGNIFICATION
?
Measure the scale bar with the ruler first.
magnification = image size ÷ actual size. Keep both in the same unit: 1 mm = 1000 µm, 1 µm = 1000 nm.

6. Size ladder: from a metre to an atom 2D · 1.1

Each step along the ladder is ten times smaller. Hover or click an object to see its size, and see which instrument can resolve it: the eye stops at about 0.1 mm, the light microscope at 200 nm, the electron microscope at about 0.5 nm.

Selected

OBJECT
click the ladder
TYPICAL SIZE
SEEN WITH
Resolution is the smallest distance between two points that can still be seen as separate. Magnification without resolution just gives a bigger blur.
unitmetresnext unit
1 mm10⁻³ m= 1000 µm
1 µm10⁻⁶ m= 1000 nm
1 nm10⁻⁹ m

7. Viruses 3D · 1.3

Not cells: no cytoplasm, no organelles, no metabolism of their own. A virus is genetic material inside a protein capsid, sometimes wrapped in a membrane envelope stolen from the last host cell. Compare three designs.

drag to rotate · wheel to zoom

Virus

SIZE
GENETIC MATERIAL
capsid proteinnucleic acidenvelope + spikes
Built for AS Level Biology 9700, Topic 1 Cell structure. Organelle shapes and sizes are schematic, drawn to teach structure and function rather than to scale. Field-of-view and graticule values follow a standard 18 mm field-number eyepiece.

About this lab: Cell structure

Seven simulations: rotate and click the organelles of a 3D animal cell, plant cell and bacterium with a test-yourself mode, a virtual light microscope with eyepiece graticule, magnification and scale-bar practice, a size ladder from a metre to an atom, and three virus designs.

Seven simulations covering Topic 1: the microscope and magnification (1.1), the organelles of eukaryotic cells (1.2), and the structure of prokaryotes and viruses (1.3). Rotate the 3D cells with drag, zoom with the wheel or pinch, and click any organelle to see what it does.

Cell structure is a free, browser-based simulation for Cambridge International AS & A Level Biology 9700 (topic 1 Cell structure). The course is assessed in Paper 1 (Multiple choice), Paper 2 (AS structured), Paper 3 (Advanced practical), Paper 4 (A Level structured), Paper 5 (Planning, analysis, evaluation). Syllabus for examination in 2025-2027. There are 7 tabs, each a self-contained experiment with its own controls and live readings, and nothing to install: it runs on a laptop, tablet or classroom projector.

Syllabus coverage

Full syllabus map: AS Level Biology 9700 topic 1.

How to use this simulation

  1. 1. Animal cell. A typical animal cell as seen with an electron microscope, rebuilt in three dimensions.
  2. 2. Plant cell. Everything the animal cell has, plus three things it does not: a cellulose cell wall, chloroplasts and a large...
  3. 3. Bacterial cell: a prokaryote. No nucleus, no membrane-bound organelles, and about a tenth of the size of a eukaryotic cell.
  4. 4. Virtual light microscope and eyepiece graticule. Choose an objective lens and see the field of view change.
  5. 5. Magnification and scale bars. An electron micrograph comes with a scale bar, not a magnification.
  6. 6. Size ladder: from a metre to an atom. Each step along the ladder is ten times smaller.
  7. 7. Viruses. Not cells: no cytoplasm, no organelles, no metabolism of their own.
  8. The buttons at the end of the tab strip give the scene the whole window (Full screen, Hide controls) and, on a dark stage, a projector-friendly palette (Light scene). Many scenes also have drag handles: drag them to change the set-up directly.

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